From 7fa5e438fb0a45fd5a7484f211e19d82f18a4b52 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 14 Jan 2020 10:49:44 -0600
Subject: [PATCH] Add metadata outputs
---
workflow/rna-seq.nf | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 6dde601..0805296 100755
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -44,6 +44,7 @@ process getBag {
output:
path ("Replicate_*.zip") into bagit
+ file ("${repRID_getBag}.getBag.err")
script:
"""
@@ -70,6 +71,11 @@ process getData {
output:
path ("*.R{1,2}.fastq.gz") into fastqs
+ file("**/File.csv") into fileMeta
+ file("**/Experiment Settings.csv") into experimentSettingsMeta
+ file("**/Experiment.csv") into experimentMeta
+ file ("${repRID_getData}.getData.err")
+
script:
"""
@@ -101,6 +107,8 @@ process trimData {
output:
path ("*.fq.gz") into fastqs_trimmed
val ends
+ file ("${repRID_trimData}.trimData.log")
+ file ("${repRID_trimData}.trimData.err")
script:
"""
--
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