From 7e5aaebfb01e7167d9afe5d8b1c04b994a2071aa Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 5 Jan 2021 12:03:38 -0600
Subject: [PATCH] Fix some bad variables
---
workflow/rna-seq.nf | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 72628ef..35627ec 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1119,6 +1119,7 @@ inputBagRID_fl.splitCsv(sep: ",", header: false).separate(
inputBagRID.into {
inputBagRID_uploadExecutionRun
inputBagRID_finalizeExecutionRun
+ inputBagRID_failPreExecutionRun
inputBagRID_failExecutionRun
}
@@ -2064,8 +2065,8 @@ process failPreExecutionRun {
path credential, stageAs: "credential.json" from deriva_failPreExecutionRun
val spike from spikeMeta_failPreExecutionRun
val species from speciesMeta_failPreExecutionRun
- val inputBagRID from inputBagRID_failExecutionRun
- val fastqCountError from fastqCountError_failExecutionRun
+ val inputBagRID from inputBagRID_failPreExecutionRun
+ val fastqCountError from fastqCountError_failPreExecutionRun
val fastqCountError_details
val fastqReadError from fastqReadError_failPreExecutionRun
val fastqReadError_details
--
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