diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 72628efc5ef8e7e2d196539334bf73ffb9e8b08b..35627ec2051e099c3b65dfa327a754a3538097cd 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -1119,6 +1119,7 @@ inputBagRID_fl.splitCsv(sep: ",", header: false).separate( inputBagRID.into { inputBagRID_uploadExecutionRun inputBagRID_finalizeExecutionRun + inputBagRID_failPreExecutionRun inputBagRID_failExecutionRun } @@ -2064,8 +2065,8 @@ process failPreExecutionRun { path credential, stageAs: "credential.json" from deriva_failPreExecutionRun val spike from spikeMeta_failPreExecutionRun val species from speciesMeta_failPreExecutionRun - val inputBagRID from inputBagRID_failExecutionRun - val fastqCountError from fastqCountError_failExecutionRun + val inputBagRID from inputBagRID_failPreExecutionRun + val fastqCountError from fastqCountError_failPreExecutionRun val fastqCountError_details val fastqReadError from fastqReadError_failPreExecutionRun val fastqReadError_details