From 7d4badfeb6b45843c1c67593ebabae7359919eb7 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 19 Jan 2021 11:38:58 -0600
Subject: [PATCH] Fix fastq run before trim
---
workflow/rna-seq.nf | 2 --
1 file changed, 2 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 54cdded..fac3f7b 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -1658,7 +1658,6 @@ process fastqc {
path (fastq) from fastqs_fastqc
val fastqCountError_fastqc
val fastqReadError_fastqc
- val pipelineError_fastqc
output:
path ("*.fastq.gz", includeInputs:true) into fastqs_trimData
@@ -1668,7 +1667,6 @@ process fastqc {
when:
fastqCountError_fastqc == 'false'
fastqReadError_fastqc == 'false'
- pipelineError_fastqc == 'false'
script:
"""
--
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