From 7ca45331a682b03a05c3eaf321bfd00c0c02a2ea Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 5 Mar 2021 17:35:57 -0600
Subject: [PATCH] Fix project context id
---
.gitlab-ci.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 374bd3c..62994e4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1025,7 +1025,7 @@ dnanexus:
- ulimit -a
- module load dxtoolkit/python27/0.294.0
- export NXF_XPACK_LICENSE=${nxf_license}
- - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id${dnanexus_workspace}
+ - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- >
dx run --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} nf-dxapp-bicf \
@@ -1035,5 +1035,5 @@ dnanexus:
--input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)"
after_script:
- module load dxtoolkit/python27/0.294.0
- - dx rm /ci-env/auth/c* --all --project-context-id ${dnanexus_workspace}
- - dx rm /ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all --project-context-id ${dnanexus_workspace}
+ - dx rm /ci-env/auth/c* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
+ - dx rm /ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
--
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