diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 374bd3c89f5ac6f36380f7b7494ba6228346379e..62994e47a560a340720c49897cb39977addf3259 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1025,7 +1025,7 @@ dnanexus: - ulimit -a - module load dxtoolkit/python27/0.294.0 - export NXF_XPACK_LICENSE=${nxf_license} - - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id${dnanexus_workspace} + - dx upload ./test_data/auth/c* --path /ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} - dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} - > dx run --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} nf-dxapp-bicf \ @@ -1035,5 +1035,5 @@ dnanexus: --input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)" after_script: - module load dxtoolkit/python27/0.294.0 - - dx rm /ci-env/auth/c* --all --project-context-id ${dnanexus_workspace} - - dx rm /ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all --project-context-id ${dnanexus_workspace} + - dx rm /ci-env/auth/c* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} + - dx rm /ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}