From 7c31f4380aec6d0ae76e1928275e2e78959c0a93 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 21 Mar 2021 12:47:00 -0500
Subject: [PATCH] Put aws ci exports on same line
---
.gitlab-ci.yml | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c35c463..722e9c0 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1096,9 +1096,10 @@ aws:
- mkdir -p ./badges/env
- curl --request GET https://img.shields.io/badge/Envronment%3A%20AWS-inactive-critical?style=flat > ./badges/env/aws.svg
- module load awscli/1.11.139
- - export AWS_ACCESS_KEY_ID=${aws_accesskeyid}
- - export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey}
- - aws configure set region ${aws_region}
+ - >
+ export AWS_ACCESS_KEY_ID=${aws_accesskeyid} &&\
+ export AWS_SECRET_ACCESS_KEY=${aws_secretaccesskey} &&\
+ aws configure set region ${aws_region}
- aws s3 cp ./test_data/auth/ s3://bicf-output/ci-env/auth/ --exclude "*" --include "c*" --recursive
- aws s3 cp ./test_data/fastq/xsmall/ s3://bicf-output/ci-env/input/ --exclude "*" --include "Q-Y5F6_10K.R*.fastq.gz" --recursive
- >
--
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