diff --git a/nextflow.config b/nextflow.config index 927e6055431a8c18dfedd0ef3817ceef61873a62..afd30628138892dcfd5189e71a6119ead21edffc 100644 --- a/nextflow.config +++ b/nextflow.config @@ -23,82 +23,82 @@ profiles { process { withName:getBag { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:getData { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:parseMetadata { - container = 'gudmaprbk/python3:1.0.0' + container = 'docker://gudmaprbk/python3:1.0.0' } withName:trimData { - container = 'gudmaprbk/trimgalore0.6.5:1.0.0' + container = 'docker://gudmaprbk/trimgalore0.6.5:1.0.0' } withName:getRefInfer { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:downsampleData { - container = 'gudmaprbk/seqtk1.3:1.0.0' + container = 'docker://gudmaprbk/seqtk1.3:1.0.0' } withName:alignSampleData { - container = 'gudmaprbk/hisat2.2.1:1.0.0' + container = 'docker://gudmaprbk/hisat2.2.1:1.0.0' } withName:inferMetadata { - container = 'gudmaprbk/rseqc4.0.0:1.0.0' + container = 'docker://gudmaprbk/rseqc4.0.0:1.0.0' } withName:checkMetadata { - container = 'gudmaprbk/gudmap-rbk_base:1.0.0' + container = 'docker://gudmaprbk/gudmap-rbk_base:1.0.0' } withName:getRef { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:alignData { - container = 'gudmaprbk/hisat2.2.1:1.0.0' + container = 'docker://gudmaprbk/hisat2.2.1:1.0.0' } withName:dedupData { - container = 'gudmaprbk/picard2.23.9:1.0.0' + container = 'docker://gudmaprbk/picard2.23.9:1.0.0' } withName:countData { - container = 'gudmaprbk/subread2.0.1:1.0.0' + container = 'docker://gudmaprbk/subread2.0.1:1.0.0' } withName:makeBigWig { - container = 'gudmaprbk/deeptools3.5.0:1.0.0' + container = 'docker://gudmaprbk/deeptools3.5.0:1.0.0' } withName:fastqc { - container = 'gudmaprbk/fastqc0.11.9:1.0.0' + container = 'docker://gudmaprbk/fastqc0.11.9:1.0.0' } withName:dataQC { - container = 'gudmaprbk/rseqc4.0.0:1.0.0' + container = 'docker://gudmaprbk/rseqc4.0.0:1.0.0' } withName:aggrQC { - container = 'gudmaprbk/multiqc1.9:1.0.0' + container = 'docker://gudmaprbk/multiqc1.9:1.0.0' } withName:uploadInputBag { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:uploadExecutionRun { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:uploadQC { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:uploadProcessedFile { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:uploadOutputBag { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:finalizeExecutionRun { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:failPreExecutionRun { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:failExecutionRun { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } withName:uploadQC_fail { - container = 'gudmaprbk/deriva1.4:1.0.0' + container = 'docker://gudmaprbk/deriva1.4:1.0.0' } }