From 76775df883a6c4829d62c0871838cac6efee171a Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 10 Feb 2021 15:52:09 -0600
Subject: [PATCH] Add local configs
---
workflow/conf/biohpc_local.config | 14 ++++++++++++++
workflow/conf/dnanexus.config | 2 +-
workflow/conf/local.config | 7 +++++++
3 files changed, 22 insertions(+), 1 deletion(-)
create mode 100755 workflow/conf/biohpc_local.config
create mode 100755 workflow/conf/local.config
diff --git a/workflow/conf/biohpc_local.config b/workflow/conf/biohpc_local.config
new file mode 100755
index 0000000..d3a6c3a
--- /dev/null
+++ b/workflow/conf/biohpc_local.config
@@ -0,0 +1,14 @@
+process {
+ executor = 'local'
+}
+
+singularity {
+ enabled = true
+ cacheDir = '/project/BICF/BICF_Core/shared/gudmap/singularity_cache/'
+}
+
+env {
+ http_proxy = 'http://proxy.swmed.edu:3128'
+ https_proxy = 'http://proxy.swmed.edu:3128'
+ all_proxy = 'http://proxy.swmed.edu:3128'
+}
diff --git a/workflow/conf/dnanexus.config b/workflow/conf/dnanexus.config
index 0dbcbaa..69060aa 100755
--- a/workflow/conf/dnanexus.config
+++ b/workflow/conf/dnanexus.config
@@ -1,5 +1,5 @@
params {
- refSource = "prod"
+ refSource = "datahub"
}
process {
diff --git a/workflow/conf/local.config b/workflow/conf/local.config
new file mode 100755
index 0000000..0e4c34d
--- /dev/null
+++ b/workflow/conf/local.config
@@ -0,0 +1,7 @@
+process {
+ executor = 'local'
+}
+
+docker {
+ enabled = true
+}
--
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