diff --git a/workflow/conf/biohpc_local.config b/workflow/conf/biohpc_local.config new file mode 100755 index 0000000000000000000000000000000000000000..d3a6c3a38689c234d65288c07d81d5b7286404c4 --- /dev/null +++ b/workflow/conf/biohpc_local.config @@ -0,0 +1,14 @@ +process { + executor = 'local' +} + +singularity { + enabled = true + cacheDir = '/project/BICF/BICF_Core/shared/gudmap/singularity_cache/' +} + +env { + http_proxy = 'http://proxy.swmed.edu:3128' + https_proxy = 'http://proxy.swmed.edu:3128' + all_proxy = 'http://proxy.swmed.edu:3128' +} diff --git a/workflow/conf/dnanexus.config b/workflow/conf/dnanexus.config index 0dbcbaaec877b7c5f7398ae605d30b274b119ac2..69060aabeed3d13a635e85c069fa2c48c9cebe18 100755 --- a/workflow/conf/dnanexus.config +++ b/workflow/conf/dnanexus.config @@ -1,5 +1,5 @@ params { - refSource = "prod" + refSource = "datahub" } process { diff --git a/workflow/conf/local.config b/workflow/conf/local.config new file mode 100755 index 0000000000000000000000000000000000000000..0e4c34de957ced30e3923a9cf8fbb510d0dcd0a2 --- /dev/null +++ b/workflow/conf/local.config @@ -0,0 +1,7 @@ +process { + executor = 'local' +} + +docker { + enabled = true +}