From 740d2eff8777933a75d3fa474cef9daa70e14857 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 4 Aug 2020 09:12:47 -0500
Subject: [PATCH] Round median TIN to 2 dp
---
workflow/conf/multiqc_config.yaml | 8 +++++---
workflow/scripts/tinHist.py | 2 +-
2 files changed, 6 insertions(+), 4 deletions(-)
diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml
index 1f3c650..5a6d3d6 100644
--- a/workflow/conf/multiqc_config.yaml
+++ b/workflow/conf/multiqc_config.yaml
@@ -80,9 +80,11 @@ custom_data:
Ends
Stranded
Spike-in
- Read Length
- TIN
- tin:
+ Read Length:
+ format: '{:,.0f}'
+ TIN:
+ format: '{:+.1f}'
+
file_format: 'tsv'
section_name: 'TIN'
description: 'This is the distribution of TIN values calculated by the tool RSeQC'
diff --git a/workflow/scripts/tinHist.py b/workflow/scripts/tinHist.py
index e97b120..3d292c2 100644
--- a/workflow/scripts/tinHist.py
+++ b/workflow/scripts/tinHist.py
@@ -36,7 +36,7 @@ def main():
#hist = hist.apply(lambda x: x/x.sum()*100, axis=1)
hist.to_csv(args.repRID + '.tin.hist.tsv',sep='\t')
medFile = open(args.repRID + '.tin.med.csv',"w")
- medFile.write(str(round(tin['TIN'][(tin['TIN']!=0)].median())))
+ medFile.write(str(round(tin['TIN'][(tin['TIN']!=0)].median(),2)))
medFile.close()
if __name__ == '__main__':
--
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