From 73e52340cb45e937fb63571f1d752865745c4787 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 10 Sep 2020 20:26:11 -0500
Subject: [PATCH] Remove conda env
---
.gitlab-ci.yml | 4 ----
1 file changed, 4 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1933736..638a295 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -240,8 +240,6 @@ humanDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- - conda create --name deriva1.3 python=3.6 -y --no-deps
- - source activate deriva1.3
- pip install deriva==1.3.0 --user
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
@@ -264,8 +262,6 @@ mousenDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- - conda create --name deriva1.3 python=3.6 -y --no-deps
- - source activate deriva1.3
- pip install deriva==1.3.0 --user
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
--
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