diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 19337361bceb8415ad44c1b05258d41ae0ef1c9d..638a295cfc2ab3851ef1d9904df1bac80e61e6de 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -240,8 +240,6 @@ humanDataHub: - query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}) - curl --request GET ${query} > refQuery.json - refURL=$(python ./workflow/scripts/extractRefData.py) - - conda create --name deriva1.3 python=3.6 -y --no-deps - - source activate deriva1.3 - pip install deriva==1.3.0 --user - deriva-hatrac-cli --host ${referenceBase} get ${refURL} @@ -264,8 +262,6 @@ mousenDataHub: - query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}) - curl --request GET ${query} > refQuery.json - refURL=$(python ./workflow/scripts/extractRefData.py) - - conda create --name deriva1.3 python=3.6 -y --no-deps - - source activate deriva1.3 - pip install deriva==1.3.0 --user - deriva-hatrac-cli --host ${referenceBase} get ${refURL}