From 71f142d5cbc81550eada806f51f4908d9102f637 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 14 Aug 2020 16:29:54 -0500
Subject: [PATCH] Output tpm table
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 9a9b553..a311b9e 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -835,7 +835,7 @@ process makeBigWig {
*/
process countData {
tag "${repRID}"
- publishDir "${outDir}/count", mode: 'copy', pattern: "${repRID}*.countTable.csv"
+ publishDir "${outDir}/count", mode: 'copy', pattern: "${repRID}*.tpmTable.csv"
input:
path script_calculateTPM
--
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