diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 9a9b553aaa01f19f28d47f620260c559336630ac..a311b9e876249c0d4cfbbb1cd13e7d94b1902807 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -835,7 +835,7 @@ process makeBigWig {
 */
 process countData {
   tag "${repRID}"
-  publishDir "${outDir}/count", mode: 'copy', pattern: "${repRID}*.countTable.csv"
+  publishDir "${outDir}/count", mode: 'copy', pattern: "${repRID}*.tpmTable.csv"
 
   input:
     path script_calculateTPM