From 70ce7af106f02d335d5eae8b0a10aa4aa486d267 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 19 Jan 2020 01:27:18 -0600
Subject: [PATCH] Fix fastq # test
---
workflow/scripts/parseMeta.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/parseMeta.py b/workflow/scripts/parseMeta.py
index 825a379..6ba068d 100644
--- a/workflow/scripts/parseMeta.py
+++ b/workflow/scripts/parseMeta.py
@@ -25,7 +25,7 @@ def main():
else:
rep=metaFile["Replicate_RID"].unique()[0]
print(rep)
- if (len(metaFile[metaFile["File_Type"] == "FastQ"].all()) > 2):
+ if (len(metaFile[metaFile["File_Type"] == "FastQ"]) > 2):
print("There are more then 2 fastq's in the metadata: " + " ".join(metaFile[metaFile["File_Type"] == "FastQ"].RID))
exit(1)
if (args.parameter == "ends"):
--
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