From 70563bcd2f70f4afcd718ae664401fdb89b5f02c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 8 Mar 2021 20:07:50 -0600
Subject: [PATCH] Make dummy env badge dir if case of emergencies
---
.gitlab-ci.yml | 1 -
workflow/scripts/get_updated_badge_info.sh | 1 +
2 files changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index e461b5c..a06827e 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1031,7 +1031,6 @@ dnanexus:
- dx upload ./test_data/fastq/xsmall/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- >
dx run nf-dxapp-bicf --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} \
- --watch \
--delay-workspace-destruction \
--instance-type mem1_ssd1_v2_x16 \
--input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)" \
diff --git a/workflow/scripts/get_updated_badge_info.sh b/workflow/scripts/get_updated_badge_info.sh
index a89d3aa..f4a30ec 100644
--- a/workflow/scripts/get_updated_badge_info.sh
+++ b/workflow/scripts/get_updated_badge_info.sh
@@ -53,6 +53,7 @@ curl --request GET https://img.shields.io/badge/RSeQC%20Version-${rseqc_version}
curl --request GET https://img.shields.io/badge/MultiQC%20Version-${multiqc_version}-blueviolet?style=flat > ./badges/tools/multiqc.svg
echo "creating blank env badges if not tested"
+mkdir -p ./badges/env
if [ ! -f ./badges/env/dnanexus.svg ]
then
curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-not_tested-important?style=flat > ./badges/env/dnanexus.svg
--
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