diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index e461b5c2d35199e3d23f3f99fe7d1cd6e862067c..a06827e26c83d9da9b6590225e3ace654744265a 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1031,7 +1031,6 @@ dnanexus: - dx upload ./test_data/fastq/xsmall/Q-Y5F6_1M.R{1,2}.fastq.gz --path /ci-env/input/ --parents --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} - > dx run nf-dxapp-bicf --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace} \ - --watch \ --delay-workspace-destruction \ --instance-type mem1_ssd1_v2_x16 \ --input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)" \ diff --git a/workflow/scripts/get_updated_badge_info.sh b/workflow/scripts/get_updated_badge_info.sh index a89d3aa0b0ee3a738efefec4dfd23d891ee2dc28..f4a30ec5e0ec7dd84146e4c701fec2876be802e0 100644 --- a/workflow/scripts/get_updated_badge_info.sh +++ b/workflow/scripts/get_updated_badge_info.sh @@ -53,6 +53,7 @@ curl --request GET https://img.shields.io/badge/RSeQC%20Version-${rseqc_version} curl --request GET https://img.shields.io/badge/MultiQC%20Version-${multiqc_version}-blueviolet?style=flat > ./badges/tools/multiqc.svg echo "creating blank env badges if not tested" +mkdir -p ./badges/env if [ ! -f ./badges/env/dnanexus.svg ] then curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-not_tested-important?style=flat > ./badges/env/dnanexus.svg