From 6ed76f56f62c3058a120be0919b7bf9f9e81f44c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 30 Jul 2020 12:27:29 -0500
Subject: [PATCH] Add initial trial for dataQC unit improvement #48
---
workflow/tests/test_dataQC.py | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/workflow/tests/test_dataQC.py b/workflow/tests/test_dataQC.py
index 28e9628..13baa1c 100644
--- a/workflow/tests/test_dataQC.py
+++ b/workflow/tests/test_dataQC.py
@@ -11,4 +11,14 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.dataQC
def test_dataQC():
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5F6_1M.se.sorted.deduped.tin.xls'))
+ assert countLines(os.path.join(test_output_path, 'Q-Y5F6_1M.se.sorted.deduped.tin.xls'))
+def countLines(fileName):
+ data = False
+ file = open(fileName, "r")
+ for line in file:
+ if file.readlines()[6] != "geneID":
+ data = True
+ break
+
+ return data
--
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