diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index eb318c349a41e6cebafd10205d9277a76cf0386f..0313d1a66172623b54aad826e77c1e86b91d7a2e 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,7 +2,7 @@ before_script: - module load python/3.6.4-anaconda - pip install --user attrs==19.1.0 pytest-pythonpath==0.7.1 pytest-cov==2.5.1 deriva==1.3.0 - module load singularity/3.5.3 - - export SINGULARITY_CACHE=/project/BICF/BICF_Core/shared/gudmap/singularity_cache + - export SINGULARITY_CACHEDIR=/project/BICF/BICF_Core/shared/gudmap/singularity_cache - module load nextflow/20.01.0 - ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/ - mkdir -p ~/.deriva