From 6dc46c16ab2486e7ddc5e95ee353d9d18e4fdb54 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 10 Sep 2020 22:03:40 -0500
Subject: [PATCH] Update .gitlab-ci.yml
---
.gitlab-ci.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6ef4ef6..fe996a1 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -240,7 +240,7 @@ humanDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- - pip install deriva==1.3.0 --user
+ - pip install --user deriva==1.3.0
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
mousenDataHub:
@@ -262,7 +262,7 @@ mousenDataHub:
- query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE})
- curl --request GET ${query} > refQuery.json
- refURL=$(python ./workflow/scripts/extractRefData.py)
- - pip install deriva==1.3.0 --user
+ - pip install --user deriva==1.3.0
- deriva-hatrac-cli --host ${referenceBase} get ${refURL}
--
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