diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 6ef4ef6f0c6f10fddda55c94acf11293fc0927e1..fe996a1cf043771492b287a462aa1a19b04edf08 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -240,7 +240,7 @@ humanDataHub: - query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}) - curl --request GET ${query} > refQuery.json - refURL=$(python ./workflow/scripts/extractRefData.py) - - pip install deriva==1.3.0 --user + - pip install --user deriva==1.3.0 - deriva-hatrac-cli --host ${referenceBase} get ${refURL} mousenDataHub: @@ -262,7 +262,7 @@ mousenDataHub: - query=$(echo 'https://'${referenceBase}'/ermrest/catalog/2/entity/RNASeq:Reference_Genome/Reference_Version='${GRCv}'.'${GRCp}'/Annotation_Version=GENCODE%20'${GENCODE}) - curl --request GET ${query} > refQuery.json - refURL=$(python ./workflow/scripts/extractRefData.py) - - pip install deriva==1.3.0 --user + - pip install --user deriva==1.3.0 - deriva-hatrac-cli --host ${referenceBase} get ${refURL}