From 6b685bcae8c0cd9122cf44d66a12055f604d265d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 3 Mar 2021 00:14:04 -0600
Subject: [PATCH] Fix versions
---
.gitlab-ci.yml | 1 +
workflow/scripts/generate_versions.py | 4 ++--
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 2456420..478d495 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -109,6 +109,7 @@ collect:
- version_featurecounts.txt
- version_r.txt
- version_deeptools.txt
+ - version_multiqc.txt
expire_in: 7 days
generateVersions:
diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index 3c04820..2ff4986 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -43,10 +43,10 @@ SOFTWARE_REGEX = {
'Seqtk': ['version_seqtk.txt', r"Version: (\S+)"],
'R': ['version_r.txt', r"R version (\S+)"],
'FastQC': ['version_fastqc.txt', r"FastQC v(\S+)"],
- 'SeqWho': ['version_seqwho.txt', r"Version: (\S+)"],
+ 'SeqWho': ['version_seqwho.txt', r"Version (\S+)"],
'RSeQC': ['version_rseqc.txt', r"infer_experiment.py (\S+)"],
'MultiQC': ['version_multiqc.txt', r"multiqc, version (\S+)"],
- 'Pipeline Version': ['./workflow/nextflow.config', r"version = 'v(\S+)'"]
+ 'Pipeline Version': ['./nextflow.config', r"version = 'v(\S+)'"]
}
--
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