diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 2456420f15bc94916a846a0a0d7d6c1b77508c8e..478d49574438ef27e74a002c380d15761600e0f2 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -109,6 +109,7 @@ collect:
       - version_featurecounts.txt
       - version_r.txt
       - version_deeptools.txt
+      - version_multiqc.txt
     expire_in: 7 days
 
 generateVersions:
diff --git a/workflow/scripts/generate_versions.py b/workflow/scripts/generate_versions.py
index 3c04820450ad5deb18d39cc9b1168df1207d9f57..2ff498659cc9acbf989ec45e61e8b755b9cc3a66 100644
--- a/workflow/scripts/generate_versions.py
+++ b/workflow/scripts/generate_versions.py
@@ -43,10 +43,10 @@ SOFTWARE_REGEX = {
     'Seqtk': ['version_seqtk.txt', r"Version: (\S+)"],
     'R': ['version_r.txt', r"R version (\S+)"],
     'FastQC': ['version_fastqc.txt', r"FastQC v(\S+)"],
-    'SeqWho': ['version_seqwho.txt', r"Version: (\S+)"],
+    'SeqWho': ['version_seqwho.txt', r"Version (\S+)"],
     'RSeQC': ['version_rseqc.txt', r"infer_experiment.py (\S+)"],
     'MultiQC': ['version_multiqc.txt', r"multiqc, version (\S+)"],
-    'Pipeline Version': ['./workflow/nextflow.config', r"version = 'v(\S+)'"]
+    'Pipeline Version': ['./nextflow.config', r"version = 'v(\S+)'"]
 }