From 6afd7f22378fc0a555a677efbc275d5459440db0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 9 Mar 2021 12:04:57 -0600
Subject: [PATCH] Fix dx status check
---
.gitlab-ci.yml | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1d95328..5dc4360 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1039,7 +1039,12 @@ dnanexus:
jobID=$(cat dx.log | grep -oP "Job ID: \K.*")
- dx watch ${jobID} --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
- status=$(dx find executions --id ${jobID} --state failed --brief --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace})
- - if [ ${status} == "" ]; then curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-run%20succesful-success?style=flat > ./badges/env/dnanexus.svg; else curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-run%20failed-critical?style=flat > ./badges/env/dnanexus.svg; fi
+ - >
+ if [ "${status}" == "" ]; then
+ curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-run%20succesful-success?style=flat > ./badges/env/dnanexus.svg
+ else
+ curl --request GET https://img.shields.io/badge/Envronment%3A%20DNAnexus-run%20failed-critical?style=flat > ./badges/env/dnanexus.svg
+ fi
after_script:
- module load dxtoolkit/python27/0.294.0
- dx rm /ci-env/auth/* --all --auth-token ${dnanexus_authToken} --project-context-id ${dnanexus_workspace}
--
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