From 6ad35821ec48f464350056c006584ad44359dc72 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 25 Jul 2021 17:30:21 -0500
Subject: [PATCH] Update ci to use nf 21
---
.gitlab-ci.yml | 2 +-
nextflow.config | 3 ++-
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index aa9e446..128afec 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -3,7 +3,7 @@ before_script:
- pip install --user attrs==20.3.0 pytest==6.2.2 pytest-pythonpath==0.7.3 pytest-cov==2.11.1
- module load singularity/3.5.3
- export SINGULARITY_CACHEDIR=${dir}cache/
- - module load nextflow/20.01.0
+ - module load nextflow/21.04.1
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
- mkdir -p ~/.deriva
- mkdir -p ~/.bdbag
diff --git a/nextflow.config b/nextflow.config
index a55575a..c75104d 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -110,7 +110,8 @@ process {
}
tower {
- accessToken = 'eyJ0aWQiOiAzODI1fS5kYjllMDk1NWRjNzExYTg3MzFlZjdlZThlMWM5YTg1ZmUxYjY1ZDNl'
+ accessToken = 'eyJ0aWQiOiAzODIyfS42YWFjOWMwZDM4Mjc1NmY0MGJiY2QxNWRkOTZlYTU4MDlmY2NkZmRj'
+ workspaceId = '84512216752206'
enabled = true
}
--
GitLab