From 69d7428533f642f72094aae25b6b2585c2e73f86 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Fri, 24 Apr 2020 16:10:18 -0500 Subject: [PATCH] Resove merge comments from @venkat.malladi --- workflow/rna-seq.nf | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 03816c1..615c68e 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -120,7 +120,6 @@ process getData { // Replicate raw fastq's for multiple process inputs fastqs.into { - fastqs_downsampleData fastqs_trimData fastqs_fastqc } @@ -324,7 +323,7 @@ process downsampleData { if [ "${ends}" == "se" ] then echo "LOG: downsampling single-end trimmed fastq" >> ${repRID}.downsampleData.err - seqtk sample -s100 *trimmed.fq.gz 10000 1> sampled.1.fq 2>> ${repRID}.downsampleData.err + seqtk sample -s100 *trimmed.fq.gz 100000 1> sampled.1.fq 2>> ${repRID}.downsampleData.err elif [ "${ends}" == "pe" ] then echo "LOG: downsampling read 1 of paired-end trimmed fastq" >> ${repRID}.downsampleData.err @@ -495,7 +494,6 @@ inferMetadata.splitCsv(sep: ",", header: false).separate( ) // Replicate metadata for multiple process inputs endsInfer.into { - endsInfer_trimData endsInfer_alignData endsInfer_countData } -- GitLab