From 68acfa31366d78e5596a73610e109a23ec7f3f60 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 4 Jan 2021 19:17:21 -0600
Subject: [PATCH] Add fail process to configs
---
workflow/conf/aws.config | 4 ++++
workflow/conf/biohpc.config | 3 +++
workflow/nextflow.config | 3 +++
3 files changed, 10 insertions(+)
diff --git a/workflow/conf/aws.config b/workflow/conf/aws.config
index 75d1c71..17ed841 100644
--- a/workflow/conf/aws.config
+++ b/workflow/conf/aws.config
@@ -112,4 +112,8 @@ process {
cpus = 1
memory = '1 GB'
}
+ withName:failExecutionRun {
+ cpus = 1
+ memory = '1 GB'
+ }
}
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 44808d6..1036cb9 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -79,6 +79,9 @@ process {
withName:finalizeExecutionRun {
executor = 'local'
}
+ withName:failExecutionRun {
+ executor = 'local'
+ }
}
singularity {
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 075d6dc..a226934 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -88,6 +88,9 @@ process {
withName:finalizeExecutionRun {
container = 'gudmaprbk/deriva1.3:1.0.0'
}
+ withName:failExecutionRun {
+ container = 'gudmaprbk/deriva1.3:1.0.0'
+ }
}
trace {
--
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