diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml index 9cf4a9a6047ba641d618f5806a771c60e8209177..5e3933562e3f05e769c36e1ce1e7c16a57ea50be 100644 --- a/workflow/conf/multiqc_config.yaml +++ b/workflow/conf/multiqc_config.yaml @@ -80,11 +80,11 @@ custom_data: Ends Stranded Spike-in - Raw-Reads - Assigned-Reads - Median-Length - Median-TIN - + Raw Reads + Assigned Reads + Median Read Length + Median TIN + tin: file_format: 'tsv' section_name: 'TIN' description: 'This is the distribution of TIN values calculated by the tool RSeQC' diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index f0a63c61c22b904284e6f07edf5d5d8a976bafc6..7dd69e5f5fee5ee2bc89572b527d230e6cd1e450 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -1029,7 +1029,7 @@ process aggrQC { # make metadata table echo -e "LOG: creating metadata table" >> ${repRID}.aggrQC.log - echo -e "Source\tSpecies\tEnds\tStranded\tSpike-in\tRaw-Reads\tAssigned-Read:\tMedia-Length\tMedian-TIN" > metadata.tsv + echo -e "Source\tSpecies\tEnds\tStranded\tSpike-in\tRaw Reads\tAssigned Reads\tMedian Read Length\tMedian TIN" > metadata.tsv echo -e "Submitter\t${speciesM}\t${endsM}\t${strandedM}\t${spikeM}\t-\t-\t'${readLengthM}'\t-" >> metadata.tsv echo -e "Infered\t${speciesI}\t${endsI}\t${strandedI}\t${spikeI}\t-\t-\t-\t-" >> metadata.tsv echo -e "Measured\t-\t${endsManual}\t-\t-\t'${rawReadsI}'\t'${assignedReadsI}'\t'${readLengthI}'\t'${tinMedI}'" >> metadata.tsv @@ -1045,4 +1045,4 @@ process aggrQC { echo -e "LOG: running multiqc" >> ${repRID}.aggrQC.log multiqc -c ${multiqcConfig} . -n ${repRID}.multiqc.html """ -} \ No newline at end of file +}