diff --git a/workflow/scripts/bdbagFetch.sh b/workflow/scripts/bdbagFetch.sh index 8a6c780bc26e274caafbdc1ab0c215a91688e8bc..fc0ffabe6de392cf220f9b0a93659ca19888a7ba 100644 --- a/workflow/scripts/bdbagFetch.sh +++ b/workflow/scripts/bdbagFetch.sh @@ -1,6 +1,6 @@ #!/bin/bash -if [ -z ${3} ] +if [ -z "${3}" ] then bdbag --resolve-fetch all --fetch-filter filename\$*fastq.gz ${1} for i in $(find */ -name "*.R*.fastq.gz") @@ -8,7 +8,7 @@ bdbag --resolve-fetch all --fetch-filter filename\$*fastq.gz ${1} path=${2}$(echo ${i##*/} | grep -o "\.R.\.fastq\.gz") mv ${i} ./${path} done -elif [ ${3} == "TEST" ] +elif [ "${3}" == "TEST" ] then bdbag --resolve-fetch all --fetch-filter filename\$*.txt ${1} fi \ No newline at end of file