diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index ea38a76d9d49c24e179eb4a50121863ce34d865c..85433d01fc7dd386611fbb95999df82ce468bfc0 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -331,7 +331,7 @@ uploadQC: cookie=$(cat credential.json | grep -A 1 '\"staging.gudmap.org\": {' | grep -o '\"cookie\": \".*\"') && cookie=${cookie:11:-1} && if [ "${exist}" != "[]" ]; then - rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}\/\/') && + rids=$(echo ${exist} | grep -o '\"RID\":\".\{7\}' | sed 's/^.\{7\}//') && for rid in ${rids}; do singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' python3 ./workflow/scripts/deleteEntry.py -r ${rid} -t mRNA_QC -o staging.gudmap.org -c ${cookie} && echo old mRNA QC RID deleted - ${rid}