diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml
index a58fd6eb08ca64d17d40d3abae7b52f074be7feb..983aa0d65d486aab48deb4acd58036986dfdfe21 100644
--- a/workflow/conf/multiqc_config.yaml
+++ b/workflow/conf/multiqc_config.yaml
@@ -13,7 +13,6 @@ report_comment: >
   This report has been generated by the <a href="https://doi.org/10.5281/zenodo.3625056">GUDMAP/RBK RNA-Seq Pipeline</a>
 
 top_modules:
-  - custom_content
   - fastqc:
       name: 'Raw'
       info: 'Replicate Raw fastq QC Results'
@@ -28,14 +27,15 @@ top_modules:
   - picard:
       name: 'Dedup'
       info: 'Replicate Alignement Deduplication QC Results'
-  - featureCounts:
-      name: 'Count'
-      info: 'Replicate Feature Count QC Results'
   - rseqc:
       name: 'Inner Distance'
       info: 'Replicate Paired End Inner Distance Distribution Results'
       path_filters:
         - '*insertSize*'
+  - custom_content
+  - featureCounts:
+      name: 'Count'
+      info: 'Replicate Feature Count QC Results'
   - hisat2:
       name: 'Inference: Align'
       info: 'Inference Alignment (1M downsampled reads) QC Results'
@@ -49,11 +49,9 @@ top_modules:
 
 report_section_order:
     rid:
-      order: 200
+      order: 2000
     meta:
-      order: 100
-    tin:
-      order: -100
+      order: 1000
 
 skip_generalstats: true