diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index fdd8308cca73531d9db11c37fae4e8cf73c29caa..55afbc04c04d77d2cd7565b46f96fb1d216a164c 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -16,4 +16,4 @@ unit: - singularity run 'docker://bicf/bdbag:1.0' bdbag --validate completeness ./test_data/File_Q-Y53P/ - find ./test_data/File_Q-Y53P/ -type f -print0 | xargs -0 md5sum > test.md5 - md5sum -c test.md5 - - assert $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') == $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) + - if [ $(md5sum test_data/File_Q-Y53P/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt | awk '{ print $1 }') != $(cat test_data/File_Q-Y53P/data/File.csv | cut -d ',' -f10 | tail -1) ] then exit