From 5e322c7974ffc658ee52b23b37ffe5d893d0675e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 2 May 2020 19:23:17 -0500
Subject: [PATCH] Fix getData
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 0ee3b54..748536d 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -144,7 +144,7 @@ process getData {
# bagit fetch fastq's only and rename by repRID
echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log
- sh ${script_bdbagFetch} ${repRID} ${repRID}
+ sh ${script_bdbagFetch} \${replicate} ${repRID}
echo -e "LOG: fetched" >> ${repRID}.getData.log
"""
}
--
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