diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 0ee3b543cd636ed308df8250334195a858171b5c..748536dea6472df8b0e08d070052249a80f1c1d1 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -144,7 +144,7 @@ process getData { # bagit fetch fastq's only and rename by repRID echo -e "LOG: fetching replicate bdbag" >> ${repRID}.getData.log - sh ${script_bdbagFetch} ${repRID} ${repRID} + sh ${script_bdbagFetch} \${replicate} ${repRID} echo -e "LOG: fetched" >> ${repRID}.getData.log """ }