From 5ce63696289adb9884ec35c6549404bfa21bbd47 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 29 Dec 2020 21:04:02 -0600
Subject: [PATCH] Update consistency test
---
workflow/tests/test_consistency.py | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/workflow/tests/test_consistency.py b/workflow/tests/test_consistency.py
index 8b7eb86..2ee7b83 100644
--- a/workflow/tests/test_consistency.py
+++ b/workflow/tests/test_consistency.py
@@ -18,8 +18,8 @@ def test_consistencySE():
with open(os.path.join(
test_output_path, 'SE_multiqc_data.json')) as f:
assigned_reads_json = json.load(f)
- assigned_reads = assigned_reads_json['report_general_stats_data'][4]['16-1ZX4']['Assigned']
- assert assigned_reads == 7742416
+ assigned_reads = assigned_reads_json['report_general_stats_data'][4]['16-1ZX4_sorted']['Assigned']
+ assert assigned_reads == 7746121
@pytest.mark.consistencyPE
@@ -30,5 +30,5 @@ def test_consistencyPE():
with open(os.path.join(
test_output_path, 'PE_multiqc_data.json')) as f:
assigned_reads_json = json.load(f)
- assigned_reads = assigned_reads_json['report_general_stats_data'][4]['Q-Y5JA']['Assigned']
- assert assigned_reads == 2599149
+ assigned_reads = assigned_reads_json['report_general_stats_data'][4]['Q-Y5JA_sorted']['Assigned']
+ assert assigned_reads == 2596053
--
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