From 5acdbca8ce92ba5ecafb0949915f1ffd3896776e Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 20 Mar 2020 11:48:50 -0500
Subject: [PATCH] Updated exit message.
---
workflow/scripts/calculateTPM.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/calculateTPM.R b/workflow/scripts/calculateTPM.R
index 18fd75a..d4851d4 100644
--- a/workflow/scripts/calculateTPM.R
+++ b/workflow/scripts/calculateTPM.R
@@ -10,7 +10,7 @@ rm(option_list)
if (!("count" %in% names(opt))){
stop("No count file passed, exiting.")
} else if (!file.exists(opt$count)) {
- stop("No count file passed, exiting.")
+ stop("Count file doesn't exist, exiting.")
}
repRID <- basename(gsub(".featureCounts","",opt$count))
--
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