From 59a56ab2b1d8022c2dff30ee2c190639dbe70973 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 6 Jan 2021 09:58:43 -0600
Subject: [PATCH] Fix inputBag local output
---
workflow/rna-seq.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index d8a6be1..4cf0ef9 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -159,7 +159,7 @@ Development : ${params.dev}
*/
process getBag {
tag "${repRID}"
- publishDir "${outDir}/inputBag", mode: 'copy', pattern: "Replicate_*.zip"
+ publishDir "${outDir}/inputBag", mode: 'copy', pattern: "*_inputBag_*.zip"
input:
path credential, stageAs: "credential.json" from deriva_getBag
--
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