From 5781d27b74021e257cfc97e5b2afcc4b2fd5c7e1 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 9 Nov 2020 21:06:21 -0600
Subject: [PATCH] Remove markdups version to see why it fails.
---
.gitlab-ci.yml | 1 -
1 file changed, 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ce00100..69bc684 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -182,7 +182,6 @@ dedupData:
done | singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' parallel -j 20 -k
- pytest -m dedupData
- singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' samtools --version > version_samtools.txt
- - singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' java -jar /picard/build/libs/picard.jar MarkDuplicates --version &> version_markdups.txt
artifacts:
name: "$CI_JOB_NAME"
when: always
--
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