From 5771fcc1e028574a934fc2208911517ca033381e Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Tue, 14 Jan 2020 12:16:00 -0600 Subject: [PATCH] Update .gitlab-ci.yml --- .gitlab-ci.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b542c5a..3e059f5 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -10,13 +10,13 @@ stages: getBag: stage: unit script: - - ln -sf `readlink -e ./test_data/auth/credential.json` ~/.deriva/credential.json + - ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 getData: stage: unit script: - - ln -sf `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt + - ln -sfn ./test_data/auth/cookies.txt ~/.bdbag/deriva-cookies.txt - unzip ./test_data/bagit/Replicate_16-1ZX4 - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4 -- GitLab