diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index b542c5a28a41cc0ac3a18ec4808280a324ecebda..3e059f56dc8300e17fafdcca035ca6440bb47393 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -10,13 +10,13 @@ stages: getBag: stage: unit script: - - ln -sf `readlink -e ./test_data/auth/credential.json` ~/.deriva/credential.json + - ln -sfn ./test_data/auth/credential.json ~/.deriva/credential.json - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' deriva-download-cli dev.gudmap.org --catalog 2 ./workflow/conf/replicate_export_config.json . rid=16-1ZX4 getData: stage: unit script: - - ln -sf `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt + - ln -sfn ./test_data/auth/cookies.txt ~/.bdbag/deriva-cookies.txt - unzip ./test_data/bagit/Replicate_16-1ZX4 - singularity run 'docker://bicf/gudmaprbkfilexfer:1.1' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4