diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4b6da0dfcd734313e0eb3c086c5280cfb3b27863..608b42288b766bd2a162b3c009fa930713cfc92b 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -288,9 +288,7 @@ uploadInputBag: script: - ln -sfn `readlink -e ./test_data/auth/credential.json` ./credential.json - > - hatrac=$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o '/TEST$') - echo wait && - if [ -z "${hatrac}" ]; then + if [ -z "$(singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org ls /hatrac/resources/rnaseq/pipeline/input_bag/ | grep -o '/TEST$')"" ]; then singularity run 'docker://gudmaprbk/deriva1.3:1.0.0' deriva-hatrac-cli --host dev.gudmap.org mkdir /hatrac/resources/rnaseq/pipeline/input_bag/TEST echo /hatrac/resources/rnaseq/pipeline/input_bag/TEST created else