diff --git a/workflow/nextflow.config b/workflow/nextflow.config index 0888063278039f3e3e7e280735670cdb94852fd4..30b7aa366a801d3d9a5819373b5683865f5c83f2 100644 --- a/workflow/nextflow.config +++ b/workflow/nextflow.config @@ -11,6 +11,9 @@ profiles { } process { + withName:trackStart { + container = 'bicf/awscli:1.1' + } withName:getBag { container = 'bicf/gudmaprbkfilexfer:1.3' } diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 3c67be3cba6ca815814a56b81ec5f268093982bc..5dcb5e26f6cea60484c3528c55afa229ccec46c5 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -58,9 +58,9 @@ process trackStart { --table-name pipeline.tracking \ --item '{ \ "sessionId": {"S": "${workflow.sessionId}"}, \ - "pipeline": {"S": "cellranger_count"}, \ + "pipeline": {"S": "GUDMAP/RBK RNA-Seq"}, \ "start": {"S": "${workflow.start}"}, \ - "astrocyte": {"BOOL": ${params.astrocyte}}, \ + "astrocyte": {"BOOL": false}, \ "status": {"S": "started"}, \ "nextflowVersion": {"S": "${workflow.nextflow.version}"}}' """