diff --git a/workflow/scripts/upload_execution_run.py b/workflow/scripts/upload_execution_run.py index 7ba9ce26085e51d18bdd45b0cbfd9122f3f75923..421d2df36b9cd5494ccc6ce58f58e609d6eeabda 100644 --- a/workflow/scripts/upload_execution_run.py +++ b/workflow/scripts/upload_execution_run.py @@ -41,7 +41,7 @@ def main(hostname, catalog_number, credential): "Execution_Status": args.status, "Execution_Status_Detail": args.statusDetail.replace('\\n','\n') } - entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) + entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] else: run_data = { diff --git a/workflow/scripts/upload_input_bag.py b/workflow/scripts/upload_input_bag.py index d2deca2c38b5ec6544bfe9960eb8774bcfd76b49..b4dbb016e6edd5523b61450b58b389e6e640aae5 100644 --- a/workflow/scripts/upload_input_bag.py +++ b/workflow/scripts/upload_input_bag.py @@ -39,7 +39,7 @@ def main(hostname, catalog_number, credential): "Bag_Type": "Replicate_Input_Seq" } - entities = inputBag_table.insert([inputBag_data], nondefaults=["RCB", "RMB"]) + entities = inputBag_table.insert([inputBag_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] print(rid) diff --git a/workflow/scripts/upload_output_bag.py b/workflow/scripts/upload_output_bag.py index 1dce763b60bee174b8da8aee60614ac5cbb31263..380a1e9cbc91f46a809c17992520b0b1c87e73e4 100644 --- a/workflow/scripts/upload_output_bag.py +++ b/workflow/scripts/upload_output_bag.py @@ -42,7 +42,7 @@ def main(hostname, catalog_number, credential): "Notes": args.notes, "Bag_Type": "mRNA_Replicate_Analysis" } - entities = outputBag_table.insert([outputBag_data], nondefaults=["RCB", "RMB"]) + entities = outputBag_table.insert([outputBag_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] else: @@ -50,7 +50,7 @@ def main(hostname, catalog_number, credential): "RID": args.update, "Execution_Run": args.executionRunRID } - entities = outputBag_table.insert([outputBag_data], nondefaults=["RCB", "RMB"]) + entities = outputBag_table.insert([outputBag_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] print(rid) diff --git a/workflow/scripts/upload_qc.py b/workflow/scripts/upload_qc.py index ce12fb63458552fdc194967420c2e999864264a5..f961e4c49c75155c94ee030267026eaf5044a3b3 100644 --- a/workflow/scripts/upload_qc.py +++ b/workflow/scripts/upload_qc.py @@ -45,14 +45,14 @@ def main(hostname, catalog_number, credential): "Median_TIN": args.tin, "Notes": args.notes } - entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) + entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] elif args.update == "E": run_data = { "Execution_Run": args.executionRunRID, "Replicate": args.repRID } - entities = run_table.insert([run_data], nondefaults=["RCB", "RMB"]) + entities = run_table.insert([run_data], nondefaults={"RCB", "RMB"}) rid = entities[0]["RID"] else: run_data = {