diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 70dcbceac5a772ff677b2d0c60255ca45b27ca4d..3c5fbb7b7f91672f4dac598efa586a615beb7b4f 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1028,11 +1028,12 @@ dnanexus: - dx upload ./test_data/auth/c* --path ${dnanexus_workspace}:/ci-env/auth/ --parents --auth-token ${dnanexus_authToken} --workspace-id ${dnanexus_workspace} - dx upload ./test_data/fastq/small/Q-Y5F6_1M.R{1,2}.fastq.gz --path ${dnanexus_workspace}:/ci-env/input/ --parents --auth-token ${dnanexus_authToken} --workspace-id ${dnanexus_workspace} - > - dx run --auth-token ${dnanexus_authToken} --workspace-id ${dnanexus_workspace} ${dnanexus_workspace}:nf-dxapp-bicf \ + dx run --auth-token ${dnanexus_authToken} --workspace-id ${dnanexus_workspace} --project ${dnanexus_workspace} nf-dxapp-bicf \ --watch \ --delay-workspace-destruction \ --instance-type mem1_ssd1_v2_x16 \ --input-json "$(envsubst < ./docs/nxf_dnanexus-ci-test.json)" after_script: + - module load dxtoolkit/python27/0.294.0 - dx rm ${dnanexus_workspace}:/ci-env/auth/c* --all - dx rm ${dnanexus_workspace}:/ci-env/input/Q-Y5F6_1M.R{1,2}.fastq.gz --all