From 50715724c49e424a5e5fe725b918ceda76f6c8ff Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Fri, 19 Feb 2021 14:06:23 -0600 Subject: [PATCH] Add test for seq type failure --- .gitlab-ci.yml | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1f93dce..ef03480 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -782,6 +782,21 @@ failFileStructure: when: - always +failSeqType: + stage: integration + only: [merge_requests] + except: + variables: + - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/ + script: + - hostname + - ulimit -a + - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-DNDJ --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failSeqType_report.html + retry: + max: 0 + when: + - always + override_inputBag: stage: integration only: [merge_requests] -- GitLab