From 50715724c49e424a5e5fe725b918ceda76f6c8ff Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 19 Feb 2021 14:06:23 -0600
Subject: [PATCH] Add test for seq type failure

---
 .gitlab-ci.yml | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 1f93dce..ef03480 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -782,6 +782,21 @@ failFileStructure:
     when:
       - always
 
+failSeqType:
+  stage: integration
+  only: [merge_requests]
+  except:
+    variables:
+      - $CI_MERGE_REQUEST_TARGET_BRANCH_NAME =~ /master/
+  script:
+  - hostname
+  - ulimit -a
+  - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-DNDJ --source staging --upload true -with-dag dag.png --dev false --ci true --track true -with-report ./failSeqType_report.html
+  retry:
+    max: 0
+    when:
+      - always
+
 override_inputBag:
   stage: integration
   only: [merge_requests]
-- 
GitLab