diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 7246fdf7fa9bf6ead553325034d16b2ce4056c5e..dd2729835958addcf710ca10ff0069d321f003f7 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -2014,18 +2014,18 @@ process aggrQC { else input=\${echo "Inferred\t${speciesI} (FORCED)\t") fi - input=\$(echo "\${input}${endsI}\t") + input=\$(echo \${input}"${endsI}\t") if [ "${params.strandedForce}" == "" ] then - input=\$(echo "\${input}${strandedI}\t") + input=\$(echo \${input}"${strandedI}\t") else - input=$(echo "\${input}${strandedI} (FORCED)\t") + input=$(echo \${input}"${strandedI} (FORCED)\t") fi if [ "${params.spikeForce}" == "" ] then - input=$(echo "\${input}${spikeI}\t-\t-\t-\t-"") + input=$(echo \${input}"${spikeI}\t-\t-\t-\t-"") else - input=$(echo "\${input}${spikeI} (FORCED)\t-\t-\t-\t-" >> metadata.tsv + input=$(echo \${input}"${spikeI} (FORCED)\t-\t-\t-\t-" >> metadata.tsv fi echo -e \${input} >> metadata.tsv echo -e "Measured\t-\t${endsManual}\t-\t-\t'${rawReadsI}'\t'${assignedReadsI}'\t'${readLengthI}'\t'${tinMedI}'" >> metadata.tsv