From 4bce8c2c211840a5ce182d8ab02ba4ddc7cbd48e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 5 Jan 2021 16:29:28 -0600
Subject: [PATCH] Fix pre error details format
---
workflow/rna-seq.nf | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf
index 6d4c1f4..37ceb40 100644
--- a/workflow/rna-seq.nf
+++ b/workflow/rna-seq.nf
@@ -360,15 +360,15 @@ process parseMetadata {
if [ "${fastqCount}" -gt "2" ]
then
fastqCountError=true
- fastqCountError_details="Too many fastqs detected (>2)"
+ fastqCountError_details="**Too many fastqs detected (>2)**"
elif [ "\${endsMeta}" == "se" ] && [ "${fastqCount}" -ne "1" ]
then
fastqCountError=true
- fastqCountError_details="Number of fastqs detected does not match submitted endness"
+ fastqCountError_details="**Number of fastqs detected does not match submitted endness**"
elif [ "\${endsMeta}" == "pe" ] && [ "${fastqCount}" -ne "2" ]
then
fastqCountError=true
- fastqCountError_details="Number of fastqs detected does not match submitted endness"
+ fastqCountError_details="**Number of fastqs detected does not match submitted endness**"
fi
# check read counts match for fastqs
@@ -381,7 +381,7 @@ process parseMetadata {
if [ "\${r1Count}" -ne "\${r2Count}" ]
then
fastqReadError=true
- fastqReadError_details="Number of reads do not match for R1 or R2, there may be a trunkation or mismatch of fastq files"
+ fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files"
fi
fi
--
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