diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index 6d4c1f48f56f2b06ff238c0987e9e4a1295aecdf..37ceb4048171184684da5d42b5b2624dde523163 100644 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -360,15 +360,15 @@ process parseMetadata { if [ "${fastqCount}" -gt "2" ] then fastqCountError=true - fastqCountError_details="Too many fastqs detected (>2)" + fastqCountError_details="**Too many fastqs detected (>2)**" elif [ "\${endsMeta}" == "se" ] && [ "${fastqCount}" -ne "1" ] then fastqCountError=true - fastqCountError_details="Number of fastqs detected does not match submitted endness" + fastqCountError_details="**Number of fastqs detected does not match submitted endness**" elif [ "\${endsMeta}" == "pe" ] && [ "${fastqCount}" -ne "2" ] then fastqCountError=true - fastqCountError_details="Number of fastqs detected does not match submitted endness" + fastqCountError_details="**Number of fastqs detected does not match submitted endness**" fi # check read counts match for fastqs @@ -381,7 +381,7 @@ process parseMetadata { if [ "\${r1Count}" -ne "\${r2Count}" ] then fastqReadError=true - fastqReadError_details="Number of reads do not match for R1 or R2, there may be a trunkation or mismatch of fastq files" + fastqReadError_details="**Number of reads do not match for R1 and R2:** there may be a trunkation or mismatch of fastq files" fi fi