From 4a8af8be8c239eb91cb06e77a38c0d5b5756d6be Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 13 Aug 2020 16:06:01 -0500
Subject: [PATCH] Revert study split to 5 parallel runs
---
workflow/scripts/splitStudy.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/scripts/splitStudy.sh b/workflow/scripts/splitStudy.sh
index 95e27a3..1f82af6 100644
--- a/workflow/scripts/splitStudy.sh
+++ b/workflow/scripts/splitStudy.sh
@@ -14,7 +14,7 @@ python3 ./workflow/scripts/splitStudy.py -s $1
# run pipeline on replicate RIDs in parallel
module load nextflow/20.01.0
module load singularity/3.5.3
-while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 10 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
+while read repRID; do echo ${repRID}; sleep 15; done < "$1_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {}
# cleanup study RID files
rm $1_studyRID.json
--
GitLab